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<front>
<journal-meta>
<journal-id journal-id-type="publisher">GMD</journal-id>
<journal-title-group>
<journal-title>Geoscientific Model Development</journal-title>
<abbrev-journal-title abbrev-type="publisher">GMD</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1991-9603</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/gmd-4-419-2011</article-id>
<title-group>
<article-title>PREP-CHEM-SRC – 1.0: a preprocessor of trace gas and aerosol emission fields for regional and global atmospheric chemistry models</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Freitas</surname>
<given-names>S. R.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Longo</surname>
<given-names>K. M.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Alonso</surname>
<given-names>M. F.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Pirre</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Marecal</surname>
<given-names>V.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Grell</surname>
<given-names>G.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Stockler</surname>
<given-names>R.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mello</surname>
<given-names>R. F.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Sánchez Gácita</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>Center for Weather Forecasting and Climate Studies, INPE, Cachoeira Paulista, Brazil</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>Earth System Science Center, INPE, São José dos Campos, Brazil</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>Laboratoire de Physique et Chimie de l&apos;Environnement et de l&apos;Espace, CNRS-Université d&apos;Orléans, Orléans, France</addr-line>
</aff>
<aff id="aff4">
<label>4</label>
<addr-line>Centre National de Recherches Météorologique/Groupe d&apos;étude de l&apos;Atmosphère Météorologique, Météo-France and CNRS, Toulouse, France</addr-line>
</aff>
<aff id="aff5">
<label>5</label>
<addr-line>Cooperative Institute for Research in Environmental Sciences (CIRES) and NOAA Earth Systems Research Laboratory (ESRL), USA</addr-line>
</aff>
<pub-date pub-type="epub">
<day>10</day>
<month>05</month>
<year>2011</year>
</pub-date>
<volume>4</volume>
<issue>2</issue>
<fpage>419</fpage>
<lpage>433</lpage>
<permissions>
<license xlink:type="simple">
<license-p>This is an open-access article ditributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.geosci-model-dev.net/4/419/2011/gmd-4-419-2011.html">This article is available from http://www.geosci-model-dev.net/4/419/2011/gmd-4-419-2011.html</self-uri>
<self-uri xlink:href="http://www.geosci-model-dev.net/4/419/2011/gmd-4-419-2011.pdf">The full text article is available as a PDF file from http://www.geosci-model-dev.net/4/419/2011/gmd-4-419-2011.pdf</self-uri>
<abstract>
<p>The preprocessor PREP-CHEM-SRC presented in the paper is a comprehensive
tool aiming at preparing emission fields of trace gases and aerosols for use
in atmospheric-chemistry transport models. The considered emissions are from
the most recent databases of urban/industrial, biogenic, biomass burning,
volcanic, biofuel use and burning from agricultural waste sources. For
biomass burning, emissions can be also estimated directly from satellite
fire detections using a fire emission model included in the tool. The
preprocessor provides emission fields interpolated onto the transport model
grid. Several map projections can be chosen. The inclusion of these
emissions in transport models is also presented. The preprocessor is coded
using Fortran90 and C and is driven by a &lt;i&gt;namelist&lt;/i&gt; allowing the user to choose the
type of emissions and the databases.</p>
</abstract>
<counts><page-count count="15"/></counts>
</article-meta>
</front>
<body/>
<back>
<ref-list>
<title>References</title>
<ref id="ref1">
<label>1</label><mixed-citation publication-type="other" xlink:type="simple"> Alonso, M. F., Longo, K., Freitas, S., Fonseca R., Marécal V., Pirre M., and Klenner, L.: An urban emission inventory for South America and its application in numerical modeling of atmospheric chemical composition at local and regional scales, Atmos. Environm., 44, 5072–5083, 2010. </mixed-citation>
</ref>
<ref id="ref2">
<label>2</label><mixed-citation publication-type="other" xlink:type="simple"> Andreae, M. and Merlet, P.: Emission of trace gases and aerosols from biomass burning, Glob. Biogeochem. Cy., 15(4), 955–966, 2001. </mixed-citation>
</ref>
<ref id="ref3">
<label>3</label><mixed-citation publication-type="other" xlink:type="simple"> Belward, A.: The IGBP-DIS global 1 km land cover data set (DISCover)-proposal and implementation plans, IGBP-DIS Working Paper No 13, Toulouse, France, 1996. </mixed-citation>
</ref>
<ref id="ref4">
<label>4</label><mixed-citation publication-type="other" xlink:type="simple"> Bleck, R., Benjamin, S., Lee, J., and MacDonald, A. E.: On the Use of an Adaptive, Hybrid-Isentropic Vertical Coordinate in Global Atmospheric Modeling, Mon. Weather Rev., 138, 2188-2210, 2010. </mixed-citation>
</ref>
<ref id="ref5">
<label>5</label><mixed-citation publication-type="other" xlink:type="simple"> Chang, J. S., Binkowski, F. S., Seaman, N. L., McHenry, J. N., Samson, P. J., Stockwell, W. R., Walcek, C. J., Madronich, S., Middleton, P. B., Pleim, J. E., and Lansford, H. H.: The regional acid deposition model and engineering model. State-of-Science/Technology, Report 4, National Acid Precipitation Assessment~Program, Washington DC, 1989. </mixed-citation>
</ref>
<ref id="ref6">
<label>6</label><mixed-citation publication-type="other" xlink:type="simple"> Crassier, V., Suhre, K., Tulet, P., and Rosset, R.: Development of a reduced chemical scheme for use in mesoscale meteorological models, Atm. Environ., 34, 2633–2644, 2000. </mixed-citation>
</ref>
<ref id="ref7">
<label>7</label><mixed-citation publication-type="other" xlink:type="simple"> Diehl, T.: A global inventory of volcanic SO&lt;sub&gt;2&lt;/sub&gt; emissions for hindcast scenarios, available at: http://www-lscedods.cea.fr/aerocom/AEROCOM_HC/ (last access: 1~May~2011), 2009. </mixed-citation>
</ref>
<ref id="ref8">
<label>8</label><mixed-citation publication-type="other" xlink:type="simple"> Diehl, T., et al.: A global inventory of subaerial volcanic SO2 emissions from 1979 to 2008, in preparation, 2011. </mixed-citation>
</ref>
<ref id="ref9">
<label>9</label><mixed-citation publication-type="other" xlink:type="simple"> Freitas, S. R., Longo, K. M., and Andreae, M. O.: Impact of including the plume rise of vegetation fires in numerical simulations of associated atmospheric pollutants, Geophys. Res. Lett., 33, L17808, http://dx.doi.org/10.1029/2006GL026608doi:10.1029/2006GL026608, 2006. </mixed-citation>
</ref>
<ref id="ref10">
<label>10</label><mixed-citation publication-type="other" xlink:type="simple"> Freitas, S. R., Longo, K. M., Chatfield, R., Latham, D., Silva Dias, M. A. F., Andreae, M. O., Prins, E., Santos, J. C., Gielow, R., and Carvalho Jr., J. A.: Including the sub-grid scale plume rise of vegetation fires in low resolution atmospheric transport models, Atmos. Chem. Phys., 7, 3385–3398, http://dx.doi.org/10.5194/acp-7-3385-2007doi:10.5194/acp-7-3385-2007, 2007. </mixed-citation>
</ref>
<ref id="ref11">
<label>11</label><mixed-citation publication-type="other" xlink:type="simple"> Freitas, S. R., Longo, K. M., Silva Dias, M. A. F., Chatfield, R., Silva Dias, P., Artaxo, P., Andreae, M. O., Grell, G., Rodrigues, L. F., Fazenda, A., and Panetta, J.: The Coupled Aerosol and Tracer Transport model to the Brazilian developments on the Regional Atmospheric Modeling System (CATT-BRAMS) –Part 1: Model description and evaluation, Atmos. Chem. Phys., 9, 2843–2861, http://dx.doi.org/10.5194/acp-9-2843-2009doi:10.5194/acp-9-2843-2009, 2009. </mixed-citation>
</ref>
<ref id="ref12">
<label>12</label><mixed-citation publication-type="other" xlink:type="simple"> Freitas, S. R., Longo, K. M., Trentmann, J., and Latham, D.: Technical Note: Sensitivity of 1-D smoke plume rise models to the inclusion of environmental wind drag, Atmos. Chem. Phys., 10, 585–594, http://dx.doi.org/10.5194/acp-10-585-2010doi:10.5194/acp-10-585-2010, 2010. </mixed-citation>
</ref>
<ref id="ref13">
<label>13</label><mixed-citation publication-type="other" xlink:type="simple"> Gibbs, H. K.: Olson&apos;s Major World Ecosytem Complexes Ranked by Carbon in Live Vegetation: An Updated Database Using the GLC2000 Land Cover Product, NDP-017b, available at: http://cdiac.ornl.gov/epubs/ndp/ndp017/ndp017b.html, Carbon Dioxide Information Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee, http://dx.doi.org/10.3334/CDIAC/lue.ndp017doi:10.3334/CDIAC/lue.ndp017, 2006. </mixed-citation>
</ref>
<ref id="ref14">
<label>14</label><mixed-citation publication-type="other" xlink:type="simple"> Gibbs, H. K., Brown, S., Niles, J. O., and Foley, J. A.: Monitoring and estimating tropical forest carbon stocks: making REDD a reality, Environ. Res. Lett., 2, 045023, http://dx.doi.org/10.1088/1748-9326/2/4/045023doi:10.1088/1748-9326/2/4/045023, 2007. </mixed-citation>
</ref>
<ref id="ref15">
<label>15</label><mixed-citation publication-type="other" xlink:type="simple"> Giglio, L.: Characterization of the tropical diurnal fire cycle using VIRS and MODIS observations, Remote Sens. Environ., 108(4), 407–421, http://dx.doi.org/10.1016/j.rse.2006.11.018doi:10.1016/j.rse.2006.11.018, 2007. </mixed-citation>
</ref>
<ref id="ref16">
<label>16</label><mixed-citation publication-type="other" xlink:type="simple"> Giglio, L., Descloitres, J., Justice, C. O., and Kaufman, Y. J.: An enhanced contextual fire detection algorithm for MODIS, Remote Sens. Environ., 87, 273–282, 2003. </mixed-citation>
</ref>
<ref id="ref17">
<label>17</label><mixed-citation publication-type="other" xlink:type="simple"> Giglio, L., van der Werf, G. R., Randerson, J. T., Collatz, G. J., and Kasibhatla, P.: Global estimation of burned area using MODIS active fire observations, Atmos. Chem. Phys., 6, 957–974, http://dx.doi.org/10.5194/acp-6-957-2006doi:10.5194/acp-6-957-2006, 2006. </mixed-citation>
</ref>
<ref id="ref18">
<label>18</label><mixed-citation publication-type="other" xlink:type="simple"> Grell, G. A., Peckham, S., Schmitz, R., McKeen, S. A., Frost, G., Skamarock, W. C., Eder, B.: Fully coupled &quot;online&quot; chemistry within the WRF model, Atmos. Environ., 39(37), 6957–6975, 2005. </mixed-citation>
</ref>
<ref id="ref19">
<label>19</label><mixed-citation publication-type="other" xlink:type="simple"> Guenther, A., Karl, T., Harley, P., Wiedinmyer, C., Palmer, P. I., and Geron, C.: Estimates of global terrestrial isoprene emissions using MEGAN (Model of Emissions of Gases and Aerosols from Nature), Atmos. Chem. Phys., 6, 3181–3210, http://dx.doi.org/10.5194/acp-6-3181-2006doi:10.5194/acp-6-3181-2006, 2006. </mixed-citation>
</ref>
<ref id="ref20">
<label>20</label><mixed-citation publication-type="other" xlink:type="simple"> Longo, K. M., Freitas, S. R., Andreae, M. O., Yokelson, R., and Artaxo, P.: Biomass burning, long-range transport of products, and regional and remote impacts, in: Amazonia and Global Change, edited by: Keller, M., Bustamante, M., Gash, J., and Silva Dias, P., American Geophysical Union, 186, 207–232, 2009. </mixed-citation>
</ref>
<ref id="ref21">
<label>21</label><mixed-citation publication-type="other" xlink:type="simple"> Longo, K. M., Freitas, S. R., Andreae, M. O., Setzer, A., Prins, E., and Artaxo, P.: The Coupled Aerosol and Tracer Transport model to the Brazilian developments on the Regional Atmospheric Modeling System (CATT-BRAMS) – Part 2: Model sensitivity to the biomass burning inventories, Atmos. Chem. Phys., 10, 5785–5795, http://dx.doi.org/10.5194/acp-10-5785-2010doi:10.5194/acp-10-5785-2010, 2010. </mixed-citation>
</ref>
<ref id="ref22">
<label>22</label><mixed-citation publication-type="other" xlink:type="simple"> Longo, K. M., Freitas, S. R., Pirre, M., Marécal, V., Rodrigues, L. F., Alonso, M. F., and Mello, R.: The Chemistry-CATT BRAMS model: a new efficient tool for atmospheric chemistry studies at local and regional scales, Geosci. Model Dev. Discuss., in preparation, 2011. </mixed-citation>
</ref>
<ref id="ref23">
<label>23</label><mixed-citation publication-type="other" xlink:type="simple"> Mastin, L., Guffanti, M., Servranckx, R., Webley, P., Barsotti, S., Dean, K., Durant, A., Ewert, J., Neri, A., and Rose, W.: A multidisciplinary effort to assign realistic source parameters to models of volcanic ash-cloud transport and dispersion during eruptions, J. Volcanol. Geoth. Res., 186(1), 10–21, 2009. </mixed-citation>
</ref>
<ref id="ref24">
<label>24</label><mixed-citation publication-type="other" xlink:type="simple"> Olson, J. S., Watts, J. A., and Allison, L. J.: Major World Ecosystem Complexes Ranked by Carbon in Live Vegetation: A Database (revised November 2000), NDP-017, available at: http://cdiac.esd.ornl.gov/ndps/ndp017.html (last access: 1~April~2010), Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA, 2000. </mixed-citation>
</ref>
<ref id="ref25">
<label>25</label><mixed-citation publication-type="other" xlink:type="simple"> Olivier, J., Bouwman, A., van der Maas, C., Berdowski, J., Veldt, C., Bloos, J., Visschedijk, A., Zandveld, P., and Haverlag, J.: Description of EDGAR Version 2.0: A Set of Global Emission Inventories of Greenhouse Gases and Ozone-Depleting Substances for All Anthropogenic and Most Natural Sources on a per Country Basis and on a 1 × 1 Degree Grid, RIVM Report 771060 002/TNO-MEP Report R96/119, National Institute of Public Health and the Environment, Bilthoven, the Netherlands, 1996. </mixed-citation>
</ref>
<ref id="ref26">
<label>26</label><mixed-citation publication-type="other" xlink:type="simple"> Olivier, J., Bouwman, A., Berdowski, J., Veldt, C., Bloos, J., Visschedijk, A., van der Maas, C., and Zandveld, P.: Sectoral emission inventories of greenhouse gases for 1990 on a per country basis as well as on 1 × 1 degree, Environ. Sci. Policy, 2, 241–264, 1999. </mixed-citation>
</ref>
<ref id="ref27">
<label>27</label><mixed-citation publication-type="other" xlink:type="simple"> Prins, E., Feltz, J., Menzel, W., and Ward, D.: An overview of GOES-8 diurnal fire and smoke results for SCAR-B and 1995 fire season in South America, J. Geophys. Res., 103(D24), 31821–31835, 1998. </mixed-citation>
</ref>
<ref id="ref28">
<label>28</label><mixed-citation publication-type="other" xlink:type="simple"> Saatchi, S., Houghton, R., Alvala, R., Yu, Y., and Soares, J.-V.: Spatial Distribution of Live Aboveground Biomass in Amazon Basin, Glob. Change Biol., 13, 816–837, 2007. </mixed-citation>
</ref>
<ref id="ref29">
<label>29</label><mixed-citation publication-type="other" xlink:type="simple"> Seinfeld, J. and Pandis, S.: Atmospheric Chemistry and Physics, John Wiley &amp; Sons Inc., New York, 1998. </mixed-citation>
</ref>
<ref id="ref30">
<label>30</label><mixed-citation publication-type="other" xlink:type="simple"> Sestini, M., Reimer, E., Valeriano, D., Alvalá, R., Mello, E., Chan, C., and Nobre, C.: Mapa de cobertura da terra da Amazônia legal para uso em modelos meteorológicos, Anais XI Simpósio Brasileiro de Sensoriamento Remoto, 2901–2906, 2003. </mixed-citation>
</ref>
<ref id="ref31">
<label>31</label><mixed-citation publication-type="other" xlink:type="simple"> Setzer, A. and Pereira, M.: Amazonia biomass burnings in 1987 and an estimate of their tropospheric emissions, Ambio, 20, 19–22, 1991. </mixed-citation>
</ref>
<ref id="ref32">
<label>32</label><mixed-citation publication-type="other" xlink:type="simple"> Stockwell, W. R., Kirchner, F., Kuhn, M., and Seefeld, S.: A New Mechanism for Regional Atmospheric Chemistry Modeling, J. Geophys. Res., 102, 25847–25879, 1997. </mixed-citation>
</ref>
<ref id="ref33">
<label>33</label><mixed-citation publication-type="other" xlink:type="simple"> van der Werf, G. R., Randerson, J. T., Giglio, L., Collatz, G. J., Kasibhatla, P. S., and Arellano Jr., A. F.: Interannual variability in global biomass burning emissions from 1997 to 2004, Atmos. Chem. Phys., 6, 3423–3441, http://dx.doi.org/10.5194/acp-6-3423-2006doi:10.5194/acp-6-3423-2006, 2006. </mixed-citation>
</ref>
<ref id="ref34">
<label>34</label><mixed-citation publication-type="other" xlink:type="simple"> Yevich, R. and Logan, J.: An assessment of biofuel use and burning of agricultural waste in the developing world, Global Biogeochem. Cy., 17(4), 1095, http://dx.doi.org/10.1029/2002GB001952doi:10.1029/2002GB001952, 2003. </mixed-citation>
</ref>
<ref id="ref35">
<label>35</label><mixed-citation publication-type="other" xlink:type="simple"> Yarwood, G., Rao, S., Yocke, M., and Whitten, G. Z.: Updates to the Carbon Bond chemical mechanism: CB05, Final Report to the US EPA, RT-0400675, 8~December~2005. </mixed-citation>
</ref>
<ref id="ref36">
<label>36</label><mixed-citation publication-type="other" xlink:type="simple"> Zhang, Y.: Online-coupled meteorology and chemistry models: history, current status, and outlook, Atmos. Chem. Phys., 8, 2895–2932, http://dx.doi.org/10.5194/acp-8-2895-2008doi:10.5194/acp-8-2895-2008, 2008. </mixed-citation>
</ref>
</ref-list>
</back>
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